CDS

Accession Number TCMCG006C20525
gbkey CDS
Protein Id XP_022556115.1
Location complement(join(52214727..52215090,52215211..52215327,52215511..52215670,52216005..52216146,52216272..52216362,52216458..52216564,52216664..52216819,52216957..52217127,52217325..52217460,52217560..52217679,52217781..52217900,52218113..52218163,52218324..52218445,52221518..52221596,52229016..52229113))
Gene LOC106429378
GeneID 106429378
Organism Brassica napus

Protein

Length 677aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022700394.1
Definition LOW QUALITY PROTEIN: rhamnogalacturonate lyase B-like [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category S
Description Polysaccharide lyase family 4, domain II
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K18195        [VIEW IN KEGG]
EC 4.2.2.23        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs -

Sequence

CDS:  
ATGAAAGTCGGAGCTCCGAGAAAGATTCGTAGTTGGGTCGTATTCCAAGTTCTTCTTCTGCATCTCCTTCCTCAAGCTGTTCATTCTCAGAGATCACAAAACAAACTTAACATCACAAAGCCTGGAGAAAACATATCATCCCTAACAATCCAGCTAAGGGGAGTTGGTAACGACAAGGTGGTCGTTGATAATGGTATTGTTCAAGTTACTTTCTCGAGCCCGCAAGGTTCGATAACTGGAATCAAATACGATGGCATCGACAATGTATTGGACGACGAAGTTGACGAACGTCGCCGTGGGTATTGGGACGTAGCCTGGTATGAACCGGAAAAGAAATTTAAAACTGACAAACTAGAAGGAACTAGATTTGAAATCATAACTCAGAACGAAGAACAAGTTGAGATTTCATTTACAAGGACGTGGACGATCTCTAAACGTGGCTCCTTGGTCCCCCTAAATGTAGACAAAAGGTACATTATTCGAAGTGGTGTCTCCGGAATATACATCTACTGTATAATGGAGAGGTTAGAAGGCTGGCCCGACGTGGACATGGACCAAATTAGAATCGTATTCAAGCTCAACCACACAATATTTAATTTCATGGCAATATCTGATGACCGGCAGAGAAGCATGCCGTCCATGGCAGATCGGAACCATGCTATGCAATTAGCTTATAAAGAAGCTGTTCTTTTGACAAATCCAAGGAACCCTATGTTCAAAGGAGAGGTAGACGATAAGTATATGTACTCAATGGAAGACAAAGATAACAACGTTCATGGTTGGATCTCGTCGGAGCCACCGGTTGGGTTTTGGATGATAACTCCAAGCGATGAGTTCCGACTTGGTGGGCCGATCAAGCAAGACCTGACTTCTCACGCGGGACCAATCACCCTCTCCATGTTTACGAGCACGCACTACGCGGGAAAAGAGATGAGAATGGGCTACAGAAATGGAGAACCATGGAAGAAGGTGTTTGGACCTGTGTTGGCTTATCTAAACTCTGTCTCTCCCAATGCTTCCACTCTTCGTCTATGGAGAGATGCCAAACGACAGATGGCTGAAGAGGTCAAAAGCTGGCCTTTTGATTTTGTACATTCAGAAAATTACCCTCTTAGTAATCAAAGAGGAACAATCCAAGGGCAGTTCTATATCAAAGATAGTTACGTGTCAAGGTTAAATATATATGGGAAATTTGCTTTTGTTGGTTTGGCACCAGTTGGTTAAGCCGGTTCATGGCAAACCAAATCCAAGGGGTATCAGTTCTGGACGAAAGCTGACAGAAAAGGGAGATTCATTATAGAGAATGTGAGGGCAGGCAACTATAGTCTCTACGCCTGGGGTATAGGTTTTATTGGTGACTACAAATATGAGCAAAACATTACCATCACGCCAGGTAGCGAGATGAACGTAGGGCCCATAGTGTATGAGCCGCCGAGAAATGGTCCAACGTTGTGGGAAATCGGTGTACCGGACCGAACAGCCGGAGAATTCTATATACCGGATCCTTATCCTACACTTATGAACAACCTCTACGTTAATCCACTTCAAGACAGATTCAGGCAATATGGATTATGGGATCGTTACTCAGATTTATACCCAGAAAACGATCTTGTCTATACAATCGGTCTAAGTAATTACAGAAGAGATTGGTTCTTTGCACATGTTACCAGAAACGTTGGAAACAATACATACCAACCAACGACATGGCAAATCGTATTCAACTTACAGAATTTGAACCGGGTCGGACTCTACACACTCCGAGTAGCTCTAGCCTCAGCCGCTGATTCAGAACTACAAGTTCGGATCAACGATCCAGAATCCGATCATATTTTTACGACTGGTTTAATCGGAAAAGACAATGCGATTGCGAGACATGGGATTCATGGGTTATATAGATTGTACAGTATCGATGTTGCGGGAAACTTACTAGGCGCTGGTGATAACACGATATATTTAACTCAATCGAGAAGTACAACACCATTTCAAGGTGTTATGTATGATTATATTCGTCTTGAAAGTCCTTTTAAAACTTGA
Protein:  
MKVGAPRKIRSWVVFQVLLLHLLPQAVHSQRSQNKLNITKPGENISSLTIQLRGVGNDKVVVDNGIVQVTFSSPQGSITGIKYDGIDNVLDDEVDERRRGYWDVAWYEPEKKFKTDKLEGTRFEIITQNEEQVEISFTRTWTISKRGSLVPLNVDKRYIIRSGVSGIYIYCIMERLEGWPDVDMDQIRIVFKLNHTIFNFMAISDDRQRSMPSMADRNHAMQLAYKEAVLLTNPRNPMFKGEVDDKYMYSMEDKDNNVHGWISSEPPVGFWMITPSDEFRLGGPIKQDLTSHAGPITLSMFTSTHYAGKEMRMGYRNGEPWKKVFGPVLAYLNSVSPNASTLRLWRDAKRQMAEEVKSWPFDFVHSENYPLSNQRGTIQGQFYIKDSYVSRLNIYGKFAFVGLAPVGXAGSWQTKSKGYQFWTKADRKGRFIIENVRAGNYSLYAWGIGFIGDYKYEQNITITPGSEMNVGPIVYEPPRNGPTLWEIGVPDRTAGEFYIPDPYPTLMNNLYVNPLQDRFRQYGLWDRYSDLYPENDLVYTIGLSNYRRDWFFAHVTRNVGNNTYQPTTWQIVFNLQNLNRVGLYTLRVALASAADSELQVRINDPESDHIFTTGLIGKDNAIARHGIHGLYRLYSIDVAGNLLGAGDNTIYLTQSRSTTPFQGVMYDYIRLESPFKT